HL_8YLR_042
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8YLR|1|A|G|218, 8YLR|1|A|A|219, 8YLR|1|A|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_042 not in the Motif Atlas
- Homologous match to HL_8P9A_119
- Geometric discrepancy: 0.1387
- The information below is about HL_8P9A_119
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
8YLR|1|A|G|216
8YLR|1|A|U|217
8YLR|1|A|G|218
8YLR|1|A|A|219
8YLR|1|A|G|220
8YLR|1|A|A|221
8YLR|1|A|A|222
8YLR|1|A|U|223
8YLR|1|A|C|224
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
Coloring options: