HL_8YLR_049

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8YLR|1|A|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_049 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1651

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8YLR|1|A|U|640
8YLR|1|A|C|641
8YLR|1|A|U|642
8YLR|1|A|U|643
8YLR|1|A|G|644
8YLR|1|A|A|645
8YLR|1|A|A|646
8YLR|1|A|A|647
8YLR|1|A|C|648
8YLR|1|A|A|649

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain c

Large ribosomal subunit protein uL15

Chain g

Large ribosomal subunit protein eL32