HL_8YLR_085

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUCAUUUU

Length

9 nucleotides

Bulged bases

8YLR|1|A|C|2539, 8YLR|1|A|A|2540

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_085 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3838

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8YLR|1|A|A|2536
8YLR|1|A|U|2537
8YLR|1|A|U|2538
8YLR|1|A|C|2539
8YLR|1|A|A|2540
8YLR|1|A|U|2541
8YLR|1|A|U|2542
8YLR|1|A|U|2543
8YLR|1|A|U|2544

Current chains

Chain A

25S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein eL8A

Chain SQ

Small ribosomal subunit protein eS1A