HL_8YLR_101

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8YLR|1|A|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_101 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.126

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8YLR|1|A|C|3194
8YLR|1|A|U|3195
8YLR|1|A|U|3196
8YLR|1|A|G|3197

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain O

Large ribosomal subunit protein eL14A