HL_8YLR_111

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8YLR|1|C|U|125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_111 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.1855

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8YLR|1|C|G|124
8YLR|1|C|U|125
8YLR|1|C|A|126
8YLR|1|C|U|127
8YLR|1|C|U|128
8YLR|1|C|C|129

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA