HL_8YOO_051

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8YOO|1|L5|A|3642, 8YOO|1|L5|A|3643, 8YOO|1|L5|U|3644, 8YOO|1|L5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_051 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1534

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8YOO|1|L5|U|3639
8YOO|1|L5|U|3640
8YOO|1|L5|U|3641
8YOO|1|L5|A|3642
8YOO|1|L5|A|3643
8YOO|1|L5|U|3644
8YOO|1|L5|U|3645
8YOO|1|L5|A|3646
8YOO|1|L5|A|3647
8YOO|1|L5|A|3648
8YOO|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37