HL_8YOO_054

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8YOO|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_054 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.088

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8YOO|1|L5|G|3757
8YOO|1|L5|U|3758
8YOO|1|L5|A|3759
8YOO|1|L5|A|3760
8YOO|1|L5|C|3761
8YOO|1|L5|U|3762
8YOO|1|L5|A|3763
8YOO|1|L5|U|3764
8YOO|1|L5|G|3765
8YOO|1|L5|A|3766
8YOO|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA