HL_8YOO_061

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8YOO|1|L5|A|4214, 8YOO|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_061 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1283

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8YOO|1|L5|U|4210
8YOO|1|L5|C|4211
8YOO|1|L5|A|4212
8YOO|1|L5|A|4213
8YOO|1|L5|A|4214
8YOO|1|L5|C|4215
8YOO|1|L5|G|4216
8YOO|1|L5|G|4217
8YOO|1|L5|U|4218
8YOO|1|L5|A|4219
8YOO|1|L5|A|4220
8YOO|1|L5|C|4221
8YOO|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29