HL_8YOO_099

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8YOO|1|S2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOO_099 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.0912

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8YOO|1|S2|U|820
8YOO|1|S2|G|821
8YOO|1|S2|U|822
8YOO|1|S2|U|823
8YOO|1|S2|C|824
8YOO|1|S2|A|825
8YOO|1|S2|A|826
8YOO|1|S2|A|827
8YOO|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24