HL_8YOP_024

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8YOP|1|L5|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_024 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0975

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8YOP|1|L5|G|1627
8YOP|1|L5|C|1628
8YOP|1|L5|G|1629
8YOP|1|L5|A|1630
8YOP|1|L5|A|1631
8YOP|1|L5|A|1632
8YOP|1|L5|G|1633
8YOP|1|L5|A|1634
8YOP|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37