HL_8YOP_061

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8YOP|1|L5|A|4214, 8YOP|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YOP_061 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1197

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8YOP|1|L5|U|4210
8YOP|1|L5|C|4211
8YOP|1|L5|A|4212
8YOP|1|L5|A|4213
8YOP|1|L5|A|4214
8YOP|1|L5|C|4215
8YOP|1|L5|G|4216
8YOP|1|L5|G|4217
8YOP|1|L5|U|4218
8YOP|1|L5|A|4219
8YOP|1|L5|A|4220
8YOP|1|L5|C|4221
8YOP|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29