HL_8YOP_102
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOP_102 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.0814
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8YOP|1|S2|A|957
8YOP|1|S2|G|958
8YOP|1|S2|G|959
8YOP|1|S2|U|960
8YOP|1|S2|G|961
8YOP|1|S2|A|962
8YOP|1|S2|A|963
8YOP|1|S2|A|964
8YOP|1|S2|U|965
8YOP|1|S2|U|966
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
Coloring options: