HL_8YOP_109
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8YOP|1|S2|U|1300, 8YOP|1|S2|G|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YOP_109 not in the Motif Atlas
- Homologous match to HL_8C3A_218
- Geometric discrepancy: 0.2245
- The information below is about HL_8C3A_218
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_81538.1
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8YOP|1|S2|A|1295
8YOP|1|S2|U|1296
8YOP|1|S2|U|1297
8YOP|1|S2|G|1298
8YOP|1|S2|A|1299
8YOP|1|S2|U|1300
8YOP|1|S2|A|1301
8YOP|1|S2|G|1302
8YOP|1|S2|C|1303
8YOP|1|S2|U|1304
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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