HL_8YUO_016

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8YUO|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUO_016 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.0742

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8YUO|1|A|G|786
8YUO|1|A|A|787
8YUO|1|A|U|788
8YUO|1|A|U|789
8YUO|1|A|A|790
8YUO|1|A|G|791
8YUO|1|A|A|792
8YUO|1|A|U|793
8YUO|1|A|A|794
8YUO|1|A|C|795
8YUO|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain V

Transfer RNA; tRNA

Chain W

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA