3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8YUO|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8YUO_016 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0742
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8YUO|1|A|G|786
8YUO|1|A|A|787
8YUO|1|A|U|788
8YUO|1|A|U|789
8YUO|1|A|A|790
8YUO|1|A|G|791
8YUO|1|A|A|792
8YUO|1|A|U|793
8YUO|1|A|A|794
8YUO|1|A|C|795
8YUO|1|A|C|796

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain V
Transfer RNA; tRNA
Chain W
mRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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