HL_8YUQ_023

3D structure

PDB id

8YUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8YUQ|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YUQ_023 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0893

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8YUQ|1|A|G|1089
8YUQ|1|A|U|1090
8YUQ|1|A|U|1091
8YUQ|1|A|A|1092
8YUQ|1|A|A|1093
8YUQ|1|A|G|1094
8YUQ|1|A|U|1095
8YUQ|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7

Chain U

30S ribosomal protein S21