3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Z70_014 not in the Motif Atlas
Homologous match to HL_8C3A_205
Geometric discrepancy: 0.1564
The information below is about HL_8C3A_205
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.2
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8Z70|1|2|A|520
8Z70|1|2|A|521
8Z70|1|2|U|522
8Z70|1|2|G|523
8Z70|1|2|U|524
8Z70|1|2|A|525
8Z70|1|2|A|526
8Z70|1|2|A|527
8Z70|1|2|U|528
8Z70|1|2|A|529
8Z70|1|2|C|530
8Z70|1|2|C|531
8Z70|1|2|U|532

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
Small ribosomal subunit protein eS4A
Chain SW
Small ribosomal subunit protein uS4A
Chain Sd
Small ribosomal subunit protein eS24A

Coloring options:


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