HL_8Z70_117

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8Z70|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_117 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.1838

The information below is about HL_8CRE_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8Z70|1|A|G|1680
8Z70|1|A|U|1681
8Z70|1|A|U|1682
8Z70|1|A|A|1683
8Z70|1|A|U|1684
8Z70|1|A|C|1685
8Z70|1|A|U|1686
8Z70|1|A|U|1687
8Z70|1|A|U|1688

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain W

Large ribosomal subunit protein eL22A