HL_8Z70_118

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8Z70|1|A|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z70_118 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.279

The information below is about HL_8P9A_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8Z70|1|A|A|2897
8Z70|1|A|G|2898
8Z70|1|A|C|2899
8Z70|1|A|A|2900
8Z70|1|A|G|2901
8Z70|1|A|A|2902
8Z70|1|A|A|2903
8Z70|1|A|U|2904

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain o

Large ribosomal subunit protein eL40A