HL_8Z71_006

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8Z71|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Z71_006 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.1449

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Z71|1|2|G|243
8Z71|1|2|A|244
8Z71|1|2|U|245
8Z71|1|2|G|246
8Z71|1|2|A|247
8Z71|1|2|U|248
8Z71|1|2|U|249
8Z71|1|2|C|250

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SX

Small ribosomal subunit protein uS17A