HL_8ZDB_007

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_007 not in the Motif Atlas

Homologous match to HL_8C3A_200

Geometric discrepancy: 0.2041

The information below is about HL_8C3A_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZDB|1|2|U|416
8ZDB|1|2|C|417
8ZDB|1|2|A|418
8ZDB|1|2|G|419
8ZDB|1|2|G|420
8ZDB|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8