HL_8ZDB_014

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8ZDB|1|2|G|821, 8ZDB|1|2|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_014 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1397

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8ZDB|1|2|U|820
8ZDB|1|2|G|821
8ZDB|1|2|U|822
8ZDB|1|2|U|823
8ZDB|1|2|C|824
8ZDB|1|2|A|825
8ZDB|1|2|A|826
8ZDB|1|2|A|827
8ZDB|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24