HL_8ZDB_023

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8ZDB|1|2|U|1300, 8ZDB|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDB_023 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.3854

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ZDB|1|2|A|1295
8ZDB|1|2|U|1296
8ZDB|1|2|U|1297
8ZDB|1|2|G|1298
8ZDB|1|2|A|1299
8ZDB|1|2|U|1300
8ZDB|1|2|A|1301
8ZDB|1|2|G|1302
8ZDB|1|2|C|1303
8ZDB|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Ubiquitin