HL_8ZDC_012

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_012 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.1417

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZDC|1|2|A|569
8ZDC|1|2|C|570
8ZDC|1|2|U|571
8ZDC|1|2|U|572
8ZDC|1|2|U|573
8ZDC|1|2|A|574
8ZDC|1|2|A|575
8ZDC|1|2|A|576
8ZDC|1|2|U|577
8ZDC|1|2|C|578
8ZDC|1|2|C|579
8ZDC|1|2|U|580
8ZDC|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24

Chain u

Pre-rRNA-processing protein TSR1 homolog