HL_8ZDC_025

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUCC

Length

8 nucleotides

Bulged bases

8ZDC|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_025 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1987

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8ZDC|1|2|G|1366
8ZDC|1|2|U|1367
8ZDC|1|2|U|1368
8ZDC|1|2|A|1369
8ZDC|1|2|A|1370
8ZDC|1|2|U|1371
8ZDC|1|2|C|1372
8ZDC|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17

Chain y

RNA-binding protein NOB1