HL_8ZDC_026

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8ZDC|1|2|U|1462, 8ZDC|1|2|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_026 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.4206

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8ZDC|1|2|C|1460
8ZDC|1|2|G|1461
8ZDC|1|2|U|1462
8ZDC|1|2|U|1463
8ZDC|1|2|C|1464
8ZDC|1|2|A|1465
8ZDC|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17

Chain g

Small ribosomal subunit protein RACK1

Chain y

RNA-binding protein NOB1