HL_8ZDD_008
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8ZDD|1|2|A|448, 8ZDD|1|2|C|450, 8ZDD|1|2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZDD_008 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.0882
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZDD|1|2|C|441
8ZDD|1|2|C|442
8ZDD|1|2|U|443
8ZDD|1|2|G|444
8ZDD|1|2|A|445
8ZDD|1|2|G|446
8ZDD|1|2|A|447
8ZDD|1|2|A|448
8ZDD|1|2|A|449
8ZDD|1|2|C|450
8ZDD|1|2|G|451
8ZDD|1|2|G|452
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- Small ribosomal subunit protein eS8
- Chain Y
- Small ribosomal subunit protein eS24
Coloring options: