HL_8ZEJ_037
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8ZEJ|1|Y|C|16, 8ZEJ|1|Y|C|17, 8ZEJ|1|Y|U|18, 8ZEJ|1|Y|G|19, 8ZEJ|1|Y|G|20, 8ZEJ|1|Y|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZEJ_037 not in the Motif Atlas
- Geometric match to HL_7LYF_001
- Geometric discrepancy: 0.2337
- The information below is about HL_7LYF_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8ZEJ|1|Y|C|13
8ZEJ|1|Y|A|14
8ZEJ|1|Y|G|15
8ZEJ|1|Y|C|16
8ZEJ|1|Y|C|17
8ZEJ|1|Y|U|18
8ZEJ|1|Y|G|19
8ZEJ|1|Y|G|20
8ZEJ|1|Y|U|21
8ZEJ|1|Y|A|22
8ZEJ|1|Y|G|23
Current chains
- Chain Y
- P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: