HL_8ZEJ_040

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8ZEJ|1|Z|C|16, 8ZEJ|1|Z|C|17, 8ZEJ|1|Z|U|18, 8ZEJ|1|Z|G|19, 8ZEJ|1|Z|G|20, 8ZEJ|1|Z|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_040 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.1404

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8ZEJ|1|Z|C|13
8ZEJ|1|Z|A|14
8ZEJ|1|Z|G|15
8ZEJ|1|Z|C|16
8ZEJ|1|Z|C|17
8ZEJ|1|Z|U|18
8ZEJ|1|Z|G|19
8ZEJ|1|Z|G|20
8ZEJ|1|Z|U|21
8ZEJ|1|Z|A|22
8ZEJ|1|Z|G|23

Current chains

Chain Z

P-site tRNA (Chain Y), A-site tRNA-PRO (Chain Z)

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA