HL_8ZEJ_048

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8ZEJ|1|b|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_048 not in the Motif Atlas

Geometric match to HL_7KKV_002

Geometric discrepancy: 0.1244

The information below is about HL_7KKV_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8ZEJ|1|b|U|137
8ZEJ|1|b|U|138
8ZEJ|1|b|U|139
8ZEJ|1|b|C|140
8ZEJ|1|b|G|141
8ZEJ|1|b|A|142

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L23