HL_8ZEJ_053

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8ZEJ|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_053 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.127

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8ZEJ|1|b|C|305
8ZEJ|1|b|U|306
8ZEJ|1|b|G|307
8ZEJ|1|b|G|308
8ZEJ|1|b|A|309
8ZEJ|1|b|A|310
8ZEJ|1|b|A|311
8ZEJ|1|b|G|312

Current chains

Chain b

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L24