HL_8ZEJ_055

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8ZEJ|1|b|G|329, 8ZEJ|1|b|A|330, 8ZEJ|1|b|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_055 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1243

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8ZEJ|1|b|G|327
8ZEJ|1|b|U|328
8ZEJ|1|b|G|329
8ZEJ|1|b|A|330
8ZEJ|1|b|C|331
8ZEJ|1|b|A|332
8ZEJ|1|b|G|333
8ZEJ|1|b|C|334
8ZEJ|1|b|C|335

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain v

50S ribosomal protein L24