3D structure

PDB id
8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E.coli ribosome in complex with an engineered arrest peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
8ZEJ|1|b|U|747, 8ZEJ|1|b|A|751, 8ZEJ|1|b|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZEJ_066 not in the Motif Atlas
Geometric match to HL_7A0S_022
Geometric discrepancy: 0.0882
The information below is about HL_7A0S_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50204.1
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
11

Unit IDs

8ZEJ|1|b|U|744
8ZEJ|1|b|G|745
8ZEJ|1|b|U|746
8ZEJ|1|b|U|747
8ZEJ|1|b|G|748
8ZEJ|1|b|A|749
8ZEJ|1|b|A|750
8ZEJ|1|b|A|751
8ZEJ|1|b|A|752
8ZEJ|1|b|A|753

Current chains

Chain b
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain 6
50S ribosomal protein L34
Chain d
50S ribosomal protein L3
Chain t
50S ribosomal protein L22
Chain z
eRAP

Coloring options:


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