HL_8ZEJ_096

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

8ZEJ|1|b|A|2211, 8ZEJ|1|b|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_096 not in the Motif Atlas

Geometric match to HL_5J7L_185

Geometric discrepancy: 0.2051

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8ZEJ|1|b|G|2209
8ZEJ|1|b|U|2210
8ZEJ|1|b|A|2211
8ZEJ|1|b|A|2212
8ZEJ|1|b|U|2213
8ZEJ|1|b|C|2214
8ZEJ|1|b|C|2215

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2