HL_8ZEJ_110

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8ZEJ|1|b|G|2751, 8ZEJ|1|b|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_110 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0997

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8ZEJ|1|b|C|2745
8ZEJ|1|b|U|2746
8ZEJ|1|b|G|2747
8ZEJ|1|b|A|2748
8ZEJ|1|b|A|2749
8ZEJ|1|b|A|2750
8ZEJ|1|b|G|2751
8ZEJ|1|b|C|2752
8ZEJ|1|b|A|2753
8ZEJ|1|b|U|2754
8ZEJ|1|b|C|2755
8ZEJ|1|b|U|2756
8ZEJ|1|b|A|2757
8ZEJ|1|b|A|2758
8ZEJ|1|b|G|2759

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain k

50S ribosomal protein L13