HL_8ZFG_026

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_026 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.178

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZFG|1|A|C|1314
8ZFG|1|A|U|1315
8ZFG|1|A|G|1316
8ZFG|1|A|C|1317
8ZFG|1|A|A|1318
8ZFG|1|A|A|1319
8ZFG|1|A|C|1320
8ZFG|1|A|U|1321
8ZFG|1|A|C|1322
8ZFG|1|A|G|1323

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19