HL_8ZFI_037
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUCGGGA
- Length
- 7 nucleotides
- Bulged bases
- 8ZFI|1|Y|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFI_037 not in the Motif Atlas
- Geometric match to HL_5VPO_138
- Geometric discrepancy: 0.2133
- The information below is about HL_5VPO_138
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8ZFI|1|Y|U|33
8ZFI|1|Y|U|34
8ZFI|1|Y|C|35
8ZFI|1|Y|G|36
8ZFI|1|Y|G|37
8ZFI|1|Y|G|38
8ZFI|1|Y|A|39
Current chains
- Chain Y
- P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 30S ribosomal protein S9
- Chain X
- Transfer RNA; tRNA
- Chain x
- mRNA
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