HL_8ZFI_039

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8ZFI|1|Z|C|16, 8ZFI|1|Z|G|19, 8ZFI|1|Z|G|20, 8ZFI|1|Z|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_039 not in the Motif Atlas

Geometric match to HL_6CFJ_106

Geometric discrepancy: 0.3285

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.1

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8ZFI|1|Z|C|13
8ZFI|1|Z|A|14
8ZFI|1|Z|G|15
8ZFI|1|Z|C|16
8ZFI|1|Z|C|17
8ZFI|1|Z|U|18
8ZFI|1|Z|G|19
8ZFI|1|Z|G|20
8ZFI|1|Z|U|21
8ZFI|1|Z|A|22
8ZFI|1|Z|G|23

Current chains

Chain Z

P-site tRNA (Chain-Y), A-site tRNA-PRO (Chain-Z)

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA