HL_8ZFI_055

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8ZFI|1|b|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_055 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.217

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZFI|1|b|A|382
8ZFI|1|b|C|383
8ZFI|1|b|A|384
8ZFI|1|b|C|385
8ZFI|1|b|G|386
8ZFI|1|b|U|387
8ZFI|1|b|G|388
8ZFI|1|b|G|389
8ZFI|1|b|U|390
8ZFI|1|b|A|391
8ZFI|1|b|U|392

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA