HL_8ZGR_011

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_011 not in the Motif Atlas

Homologous match to HL_8CRE_011

Geometric discrepancy: 0.0939

The information below is about HL_8CRE_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZGR|1|LA|U|382
8ZGR|1|LA|G|383
8ZGR|1|LA|A|384
8ZGR|1|LA|A|385
8ZGR|1|LA|A|386
8ZGR|1|LA|A|387

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A