HL_8ZGR_019

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_019 not in the Motif Atlas

Homologous match to HL_8CRE_018

Geometric discrepancy: 0.1065

The information below is about HL_8CRE_018

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZGR|1|LA|G|843
8ZGR|1|LA|G|844
8ZGR|1|LA|A|845
8ZGR|1|LA|A|846
8ZGR|1|LA|A|847
8ZGR|1|LA|C|848

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SX

Small ribosomal subunit protein uS17A

Chain SY

Small ribosomal subunit protein uS15