HL_8ZGR_020

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8ZGR|1|LA|U|878, 8ZGR|1|LA|A|882, 8ZGR|1|LA|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_020 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.0609

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8ZGR|1|LA|A|875
8ZGR|1|LA|C|876
8ZGR|1|LA|G|877
8ZGR|1|LA|U|878
8ZGR|1|LA|G|879
8ZGR|1|LA|C|880
8ZGR|1|LA|A|881
8ZGR|1|LA|A|882
8ZGR|1|LA|A|883
8ZGR|1|LA|U|884

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A

Chain Ll

Large ribosomal subunit protein eL37A