HL_8ZGR_057

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_057 not in the Motif Atlas

Homologous match to HL_8CRE_057

Geometric discrepancy: 0.1755

The information below is about HL_8CRE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80599.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZGR|1|LA|U|2723
8ZGR|1|LA|U|2724
8ZGR|1|LA|C|2725
8ZGR|1|LA|A|2726
8ZGR|1|LA|G|2727
8ZGR|1|LA|U|2728
8ZGR|1|LA|G|2729
8ZGR|1|LA|U|2730
8ZGR|1|LA|G|2731

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LS

Large ribosomal subunit protein eL18A

Chain LV

Large ribosomal subunit protein eL21A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lq

Large ribosomal subunit protein eL42A