HL_8ZGR_088

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8ZGR|1|S2|A|452, 8ZGR|1|S2|U|453, 8ZGR|1|S2|U|454, 8ZGR|1|S2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_088 not in the Motif Atlas

Geometric match to HL_8Y0B_001

Geometric discrepancy: 0.1223

The information below is about HL_8Y0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8ZGR|1|S2|U|450
8ZGR|1|S2|A|451
8ZGR|1|S2|A|452
8ZGR|1|S2|U|453
8ZGR|1|S2|U|454
8ZGR|1|S2|C|455
8ZGR|1|S2|A|456

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain Sd

Small ribosomal subunit protein eS24A