3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UAAGCAUA
Length
8 nucleotides
Bulged bases
8ZGY|1|LA|A|40, 8ZGY|1|LA|A|43
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_001 not in the Motif Atlas
Homologous match to HL_8P9A_113
Geometric discrepancy: 0.0639
The information below is about HL_8P9A_113
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8ZGY|1|LA|U|38
8ZGY|1|LA|A|39
8ZGY|1|LA|A|40
8ZGY|1|LA|G|41
8ZGY|1|LA|C|42
8ZGY|1|LA|A|43
8ZGY|1|LA|U|44
8ZGY|1|LA|A|45

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LN
Large ribosomal subunit protein eL13A
Chain LP
Large ribosomal subunit protein eL15A
Chain Lc
Large ribosomal subunit protein uL15
Chain Lq
Large ribosomal subunit protein eL42A

Coloring options:


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