HL_8ZGY_004

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

8ZGY|1|LA|U|133, 8ZGY|1|LA|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_004 not in the Motif Atlas

Homologous match to HL_8CRE_004

Geometric discrepancy: 0.0984

The information below is about HL_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8ZGY|1|LA|C|132
8ZGY|1|LA|U|133
8ZGY|1|LA|U|134
8ZGY|1|LA|C|135
8ZGY|1|LA|G|136

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LP

Large ribosomal subunit protein eL15A

Chain Lj

Large ribosomal subunit protein uL29A