HL_8ZGY_005

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_005 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0633

The information below is about HL_8P9A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8ZGY|1|LA|U|194
8ZGY|1|LA|U|195
8ZGY|1|LA|G|196
8ZGY|1|LA|G|197
8ZGY|1|LA|A|198
8ZGY|1|LA|A|199
8ZGY|1|LA|C|200
8ZGY|1|LA|A|201

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A

Chain Lg

Large ribosomal subunit protein eL32