HL_8ZGY_019

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_019 not in the Motif Atlas

Homologous match to HL_8P9A_131

Geometric discrepancy: 0.0785

The information below is about HL_8P9A_131

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|LA|G|843
8ZGY|1|LA|G|844
8ZGY|1|LA|A|845
8ZGY|1|LA|A|846
8ZGY|1|LA|A|847
8ZGY|1|LA|C|848

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SY

Small ribosomal subunit protein uS15