HL_8ZGY_021

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|A|912, 8ZGY|1|LA|G|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_021 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.051

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8ZGY|1|LA|G|909
8ZGY|1|LA|C|910
8ZGY|1|LA|G|911
8ZGY|1|LA|A|912
8ZGY|1|LA|A|913
8ZGY|1|LA|A|914
8ZGY|1|LA|G|915
8ZGY|1|LA|A|916
8ZGY|1|LA|C|917

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LP

Large ribosomal subunit protein eL15A

Chain Ll

Large ribosomal subunit protein eL37A