HL_8ZGY_022

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8ZGY|1|LA|C|958, 8ZGY|1|LA|A|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_022 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.1304

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8ZGY|1|LA|C|957
8ZGY|1|LA|C|958
8ZGY|1|LA|U|959
8ZGY|1|LA|C|960
8ZGY|1|LA|A|961
8ZGY|1|LA|G|962

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lc

Large ribosomal subunit protein uL15

Chain Ld

Large ribosomal subunit protein eL29

Chain Lq

Large ribosomal subunit protein eL42A