HL_8ZGY_033

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_033 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.0562

The information below is about HL_8CRE_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZGY|1|LA|G|1543
8ZGY|1|LA|A|1544
8ZGY|1|LA|A|1545
8ZGY|1|LA|G|1546
8ZGY|1|LA|C|1547
8ZGY|1|LA|U|1548

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LP

Large ribosomal subunit protein eL15A

Chain Ll

Large ribosomal subunit protein eL37A